species:   Artha
pid:       MI0016587
parent:    ath-MIR3932a
paralog:   
locus:     4:2179000-2179122
matures:   ['AACUUUGUGAUGACAACGAAG', 'UCAUCGUCAUCACAAAUUUCU']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 4:2179000-2179122

9 out of bounds
2 alignments
2 proper strand
1 stranded perfect matches

              **************************                                           **************************              
UGCUCUUCUAUGUCUUCAUCGUCAUCACAAAUUUCUUCAAACUUAAAUAUCUUAAGGACCUUCAACGGACUUGAUAAUAGAGAUUAACGAACUUUGUGAUGACAACGAAGAUACAGAGGAUCA
((.((((((.(((((((...(((((((((((.(((......(((...((((..(((..((......)).)))))))...)))......))).)))))))))))...))))))).)))))).))
-----------------------------------------------------------------------------------------AACUUUGUGAUGACAACGAAG------------- l=21 a=0 c
---------------UCAUCGUCAUCACAAAUUUCU--------------------------------------------------------------------------------------- l=21 a=0 c*
----------------CAUCGUCAUCACAAAUUUCUUCAA----------------------------------------------------------------------------------- l=24 a=1 ma
-------------------------------------------------------------------------------------AACGAACUUUGUGAUGACAACGAA-------------- l=24 a=0 ma*

----------------CAUCGUCAUCACAAAUUUCUUCAA----------------------------------------------------------------------------------- l=24 a=1 (ma)
------------------------------------------------------------UUCAACGGACUUGAUAAUAGAGAc--------------------------------------- l=24 a=1 

mb-01011
ax-1001011
ku-01
ss-110111101100
fn-011
